Databases currently included in biobar

biobar 1.2.3 provides browsing and searching access to the following biological databases.

The latest inclusions are aMAZE and KEGG. In addition, new search terms have been added to BioCyc plus links to STRAP and TRUST analysis tools from the main menu. An options menu allows customization of the databases (setting up defaults, choosing which group/s of databases to see, adding NCBI Library LinkOuts etc).


Data Collections
1. EBI Databases with SRS
2. NCBI Databases
3. DNA Database of Japan(DDBj)
Functional Databases
  1. aMAZE
  2. BioCyc
  3. KEGG
  4. Gene Ontology (GO)
  5. IntAct
  6. Reactome Database
Sequence Databases
  1. EMBL Nucleotide Database
  2. Ensembl Genome Browser
  3. UniProt Sequence Database
  4. InterPro
  5. Integr8
  6. Expert Protein Analysis System (ExPASy)
  7. Pfam
  8. Alternative Splicing Database (ASD)
  9. Glovar Genome Browser
Structural Databases
  1. Macromolecular Structure Database (MSD)
  2. Research Collaboratory for Structural Bioinformatics (RCSB)
  3. Protein Data Bank Japan (PDBj)
  4. PDBsum
  5. EM-Search
  6. Nucleic Acid Database (NDB)
  7. CATH
  8. SCOP
Animal Databases
  1. Saccharomyces Genome Database (SGD)
  2. Flybase
  3. Wormbase
  4. Rat Genome Database (RGD)
  5. Mouse Genome Informatics (MGI)
  6. Zebrafish Information (ZFIN)
Plant Databases
  1. Gramene
  2. MaizeGDB