File:  [mozdev] / biobar / www / index.html
Revision 1.14: download - view: text, annotated - select for diffs - revision graph
Wed Jul 28 15:50:45 2004 UTC (14 years, 7 months ago) by jawahar
Branches: MAIN
CVS tags: HEAD
New Index for Version 1.1 of Biobar


<!-- ***************** INFO/NEWS *************** -->
  <div id="infoTabs">
    <div class="infoTab" id="whats-new">
      <h5 class="infoHeader">What's New</h5>
      <ul>
	<li>biobar 1.1 - 28th July 2004</li>
	<li>biobar- First Release July 2004</li>
      </ul>
    </div>
    
    <div class="infoTab" id="other-stuff">
      <h5 class="infoHeader">Other Stuff</h5>
      <ul>
	<li><a href="http://msdbar.mozdev.org">MSDbar</a></li>
	<li><a href="http://mozdev.org/">mozdev.org</a></li>
      </ul>
    </div>
    
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  <div><a href="http://mozdev.org/">mozdev.org</a></div>
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  <!-- ***************** INFO/NEWS *************** -->
  
  <!-- MAIN CONTENT -->
  <h3> Biobar - A toolbar for browsing biological data and databases.</h3>
  <p>The <strong>biobar</strong> project is a bioinformatics power-browsing toolbar for Mozilla-based browsers 
    including Firefox and Netscape 7+. This toolbar provides access to all major biological data resources. 
    The primary advantage of this tool is that it allows a biologist to browse and retrieve data from Genomic, 
    Proteomic, Functional, Literature, Taxonomic and Structural databases. In addition to the browsing 
    features, <strong>biobar</strong>
    also provides links to important bioinformatics sites and services including services at the 
    <a href="http://www.ebi.ac.uk/">European Bioinformatics Institute (EBI)</a>,
    <a href="http://www.ncbi.nlm.nih.gov/">National Center for Biotechnology Information (NCBI)</a> and
    <a href="http://www.ddbj.nig.ac.jp/">DNA Data Bank of Japan (DDBJ)</a>. The tool also 
    provides links to major data deposition sites for nucleotide, protein and 3D-structure data. Finally, the 
    menu also contains links to many Sequence, Structure alignment and analysis tools.</p>

    <p>If you have downloaded and used <strong>biobar</strong>, I would appreciate your comment on how
      you found the toolbar. Please leave a comment at <a href="http://update.mozilla.org/extensions/moreinfo.php?id=169&vid=308&category=Search%20Tools&vid=308&page=opinion">Mozilla update</a></p>
  
  <p> The latest release <strong>(Version 1.1)</strong> of biobar provides browsing access to the following biological databases:

<table style="width: 70%; text-align: left;" border="1" cellpadding="2"
cellspacing="2">
<tbody>
<tr>
<td style="vertical-align: top;">Structure Databases<br>
</td>
<td style="vertical-align: top;">
<ul>
<li>Macromolecular Structure
Database (MSD)</li>
<br>
<li>Research Collaboratory for Structural Bioinformatics (RCSB)</li><br>
<li>Protein Data Bank, Japan</li><br>
<li>Pfam</li><br>
<li>CATH</li><br>
<li>SCOP</li><br>
</ul>
</td>
</tr>
<tr>
<td style="vertical-align: top;">Sequence Databases<br>
</td>
<td style="vertical-align: top;">
<ul>
<li>EMBL Nucleotide Database</li><br>
<li>Ensembl Genome Browser</li><br>
<li>UniProt Sequence Database</li><br>
<li>InterPro</li><br>
<li>Integr8</li><br>
<li>Expert Protein Analysis System (ExPASy)</li><br>
</ul>
</td>
</tr>
<tr>
<td style="vertical-align: top;">Functional Databases<br>
</td>
<td style="vertical-align: top;">
<ul>
<li>Gene Ontology (GO)</li><br>
<li>IntAct</li><br>
<li>Reactome Database</li><br>
</ul>
</td>
</tr>
<td style="vertical-align: top;">Plant Databases<br>
</td>
<td style="vertical-align: top;">
<ul>
<li>Gramene</li><br>
<li>MaizeGDB</li><br>
</ul>
</td>
</tr>
<tr>
<td style="vertical-align: top;">Other Data Collections<br>
</td>
<td style="vertical-align: top;">
<ul>
<li>NCBI Databases including PubMed, OMIM, Genome, Protein, Nucleotide, MeSH etc</li><br>
<li>DNA Data Bank of Japan (DDBJ)</li><br></ul></td>
</tr>
</tbody>
</table>
</p>  
  <p><img src ="biobar.jpg" alt="biobar">
      
      <p> Biobar is an extension of the <a href="http://msdbar.mozdev.org/">MSDbar project</a> and complements 
	the functionality provided by <a href="http://expasybar.mozdev.org/">expasybar</a> and 
	<a href="http://pubmed.mozdev.org/">pubmedbar</a>. <b>Note:</b> Please unintall MSDbar before
	installing <strong>biobar</strong>. MSDbar may be uninstalled from the dropdown menu item (Uninstall)
	if <strong>jslib</strong> has been installed. You can install jslib 
	<a href="http://downloads.mozdev.org/jslib/xpi/jslib_current.xpi"><strong>here</strong></a>
      </p>
      
      <p> This project is under development and any comments/suggestions are welcome. 
	Please write to <script language="JavaScript">
	  document.write('<a hr'+'ef="mai'+'lto'+':'+'%6a%61%77%61%68%61%72%40%65%62%69%2e%61%63%2e%75%6b">&#106;&#97;&#119;&#97;&#104;&#97;&#114;&#64;&#101;&#98;&#105;&#46;&#97;&#99;&#46;&#117;&#107;<\/a>');
	</script></p>
      
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