Diff for /biobar/www/index.html between versions 1.12 and 1.38

version 1.12, 2004/07/08 21:45:01 version 1.38, 2005/03/09 16:43:42
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<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
 <html>
 <head>
   <meta name="generator" content="HTML Tidy, see www.w3.org">
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  <div id="infoTabs">  <title></title>
    <div class="infoTab" id="whats-new"></head>
      <h5 class="infoHeader">What's New</h5><body>
      <ul><div id="infoTabs">
        <li>biobar- First Release July 2004</li><div class="infoTab" id="whats-new">
      </ul><h5 class="infoHeader">What's New</h5>
    </div><ul>
      <li>biobar 1.3 - 09 Mar 2005</li>
    <div class="infoTab" id="other-stuff">  <li>biobar- First Release July 2004</li>
      <h5 class="infoHeader">Other Stuff</h5></ul>
      <ul></div>
        <li><a href="http://msdbar.mozdev.org">MSDbar</a></li><div class="infoTab" id="other-stuff">
        <li><a href="http://mozdev.org/">mozdev.org</a></li><h5 class="infoHeader">Other Stuff</h5>
      </ul><ul>
    </div>  <li><a href="http://mozdev.org/">mozdev.org</a></li>
      <li><a href="http://www.ebi.ac.uk/">EBI Home</a></li>
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   <div class="infoTab" id="whats-new-image">    <div class="infoTab" id="whats-new-image">
   <h5 class="infoHeader"><img src="http://www.mozdev.org/sharedimages/whatsnew_top.gif" width="154" alt="What's New"></h5>    <h5 class="infoHeader"><img src="http://www.mozdev.org/sharedimages/whatsnew_top.gif" width="154" alt="What's New"></h5>
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   <div><a href="http://mozdev.org/">mozdev.org</a></div>    <div><a href="http://mozdev.org/">mozdev.org</a></div>
   </div>    </div>
   </div>    </div>
    -->    --></div>
 <!-- ***************** INFO/NEWS *************** -->
 <!-- MAIN CONTENT -->
 <h3>Biobar - A toolbar for browsing biological data and
 databases.</h3>
 <p>The <strong>biobar</strong> project is a bioinformatics
 power-browsing toolbar for Mozilla-based browsers including
 Firefox and Netscape 7+. This toolbar provides access to all
 major biological data resources. The primary advantage of this
 tool is that it allows a biologist to browse and retrieve data
 from Genomic, Proteomic, Functional, Literature, Taxonomic,
 Structural, Plant and Animal-specific databases. In addition to
 the browsing features, <strong>biobar</strong> also provides
 links to important bioinformatics sites and services including
 services at the <a href="http://www.ebi.ac.uk/">European
 Bioinformatics Institute (EBI)</a>, <a
  href="http://www.ncbi.nlm.nih.gov/">National Center for Biotechnology
 Information (NCBI)</a> and <a href="http://www.ddbj.nig.ac.jp/">DNA
 Data Bank of Japan (DDBJ)</a>.
 The tool also provides links to major data deposition sites for
 nucleotide, protein and 3D-structure data. Finally, the menu also
 contains links to many Sequence, Structure alignment and analysis
 tools.</p>
 <p>The latest release <strong>(Version 1.3)</strong> of biobar
 provides browsing access to <span style="font-weight: bold;">38
 different biological databases</span> (<a
  href="http://biobar.mozdev.org/Databases.html">listed here</a>) as well as a <b><i>significant</i></b> improvement in the codebase and functionality (See Below).</p>
 <p><img alt="biobar_icon" src="http://biobar.mozdev.org/biobar_icon.jpg">
 If you have downloaded,used and liked <strong>biobar</strong>,
 please spread the word by adding this icon to your webpage using the
 code below.</p>
 <code>&lt;a href="http://biobar.mozdev.org"&gt;&lt;img border="0"
 src="http://biobar.mozdev.org/biobar_icon.jpg" /&gt;</code>
 <p><img src="http://biobar.mozdev.org/biobar1.jpg" alt="biobar"></p>
 <p> New in <strong>Version 1.3</strong>:
 </p>
 <li>Search Groups of Data (sequences, function, taxonomy)</li>
 <li>Add/Save/Edit Custom Links on toolbar menu</li>
 <li>Open searches in new tab/existing tab</li>
 <li>BioCyc species read in from remote XML file for dynamic updates</li>
 <li>Biobar code rewritten from scratch to move to a manageable XML
 based format.</li>
 <li>Add/Replace own search databases by simple edits of XML files.
 See <a href="http://biobar.mozdev.org/customize.html">Customize</a></li>
 </body>
 <body>
 <div id="infoTabs">
 <div class="infoTab" id="whats-new">
 <h5 class="infoHeader">What's New</h5>
 <ul>
   <li>biobar 1.3 - 09 Mar 2005</li>
   <li>biobar- First Release July 2004</li>
 </ul>
 </div>
 <div class="infoTab" id="other-stuff">
 <h5 class="infoHeader">Other Stuff</h5>
 <ul>
   <li><a href="http://mozdev.org/">mozdev.org</a></li>
   <li><a href="http://www.ebi.ac.uk/">EBI Home</a></li>
 </ul>
 </div>
 <!-- alternative image/table base tab works better in NS4 --><!--
   <div class="infoTab" id="whats-new-image">
   <h5 class="infoHeader"><img src="http://www.mozdev.org/sharedimages/whatsnew_top.gif" width="154" alt="What's New"></h5>
   <div class="infoItems">
   <div>News item goes here</div>
   <div>More news item goes here</div>
   <div><a href="http://mozdev.org/">mozdev.org</a></div>
   </div>    </div>
  <!-- ***************** INFO/NEWS *************** -->  </div>
      --></div>
  <!-- MAIN CONTENT --><!-- ***************** INFO/NEWS *************** -->
  <h3> Biobar - A toolbar for browsing biological data and databases.</h3><!-- MAIN CONTENT -->
  <p>The <strong>biobar</strong> project is a bioinformatics power-browsing toolbar for Mozilla-based browsers <h3>Biobar - A toolbar for browsing biological data and
    including Firefox and Netscape 7+. This toolbar provides access to all major biological data resources. databases.</h3>
    The primary advantage of this tool is that it allows a biologist to browse and retrieve data from Genomic, <p>The <strong>biobar</strong> project is a bioinformatics
    Proteomic, Functional, Literature, Taxonomic and Structural databases. In addition to the browsing power-browsing toolbar for Mozilla-based browsers including
    features, <strong>biobar</strong>Firefox and Netscape 7+. This toolbar provides access to all
    also provides links to important bioinformatics sites and services including services at the major biological data resources. The primary advantage of this
    <a href="http://www.ebi.ac.uk/">European Bioinformatics Institute (EBI)</a>,tool is that it allows a biologist to browse and retrieve data
    <a href="http://www.ncbi.nlm.nih.gov/">National Center for Biotechnology Information (NCBI)</a> andfrom Genomic, Proteomic, Functional, Literature, Taxonomic,
    <a href="http://www.ddbj.nig.ac.jp/">DNA Data Bank of Japan (DDBJ)</a>. The tool also Structural, Plant and Animal-specific databases. In addition to
    provides links to major data deposition sites for nucleotide, protein and 3D-structure data. Finally, the the browsing features, <strong>biobar</strong> also provides
    menu also contains links to many Sequence, Structure alignment and analysis tools.</p>links to important bioinformatics sites and services including
  services at the <a href="http://www.ebi.ac.uk/">European
  <p> The first release of biobar provides browsing access to the following biological databases:Bioinformatics Institute (EBI)</a>, <a
 href="http://www.ncbi.nlm.nih.gov/">National Center for Biotechnology
<table style="width: 60%; text-align: left;" border="1" cellpadding="2"Information (NCBI)</a> and <a href="http://www.ddbj.nig.ac.jp/">DNA
cellspacing="2">Data Bank of Japan (DDBJ)</a>.
<tbody>The tool also provides links to major data deposition sites for
<tr>nucleotide, protein and 3D-structure data. Finally, the menu also
<td style="vertical-align: top;">Structure Databases<br>contains links to many Sequence, Structure alignment and analysis
</td>tools.</p>
<td style="vertical-align: top;">Macromolecular Structure<p>The latest release <strong>(Version 1.3)</strong> of biobar
Database (MSD)<br>provides browsing access to <span style="font-weight: bold;">38
Research Collaboratory for Structural Bioinformatics (RCSB)<br>different biological databases</span> (<a
Protein Data Bank, Japan<br> href="http://biobar.mozdev.org/Databases.html">listed here</a>) as
Pfam<br>well as a <span style="font-weight: bold; font-style: italic;">significant</span>
CATH<br>improvement over the previous versions (See below). With this version,
SCOP<br>it is possible to customize one's own search databases, and terms.</p>
</td><p><img alt="biobar_icon" src="http://biobar.mozdev.org/biobar_icon.jpg">
</tr>If you have downloaded,used and liked <strong>biobar</strong>,
<tr>please spread the word by adding this icon to your webpage using the
<td style="vertical-align: top;">Sequence Databases<br>code below.</p>
</td><code>&lt;a href="http://biobar.mozdev.org"&gt;&lt;img border="0"
<td style="vertical-align: top;">EMBL Nucleotide Database<br>src="http://biobar.mozdev.org/biobar_icon.jpg" /&gt;</code>
Ensembl Genome Browser<br><p><img src="http://biobar.mozdev.org/biobar1.jpg" alt="biobar"></p>
UniProt Sequence Database<br><p> New in <strong>Version 1.3</strong>:
InterPro<br></p>
Expert Protein Analysis System (ExPASy)<br><li>Search Groups of Data (sequences, function, taxonomy)</li>
<br><li>Add/Save/Edit Custom Links on toolbar menu</li>
</td><li>Open searches in new tab/existing tab</li>
</tr><li>BioCyc species read in from remote XML file for dynamic updates</li>
<tr><li>Biobar code rewritten from scratch to move to a manageable XML
<td style="vertical-align: top;">Functional Databases<br>based format.</li>
</td><li>Add/Replace own search databases by simple edits of XML files.
<td style="vertical-align: top;">Gene Ontology (GO)<br>See <a href="http://biobar.mozdev.org/customize.html">Customize</a></li>
IntAct<br><div id="infoTabs">
Reactome Database<br><div class="infoTab" id="whats-new">
</td><h5 class="infoHeader">What's New</h5>
</tr><ul>
<tr>  <li>biobar 1.3 - 09 Mar 2005</li>
<td style="vertical-align: top;">Other Data Collections<br>  <li>biobar- First Release July 2004</li>
</td></ul>
<td style="vertical-align: top;">NCBI Databases including PubMed,</div>
OMIM, Genome, Protein, Nucleotide, MeSH etc<br><div class="infoTab" id="other-stuff">
DNA Data Bank of Japan (DDBJ)</td><h5 class="infoHeader">Other Stuff</h5>
</tr><ul>
</tbody>  <li><a href="http://mozdev.org/">mozdev.org</a></li>
</table>  <li><a href="http://www.ebi.ac.uk/">EBI Home</a></li>
</p>  </ul>
  <p><img src ="biobar.jpg" alt="biobar"></div>
      <!-- alternative image/table base tab works better in NS4 --><!--
      <p> Biobar is an extension of the <a href="http://msdbar.mozdev.org/">MSDbar project</a> and complements   <div class="infoTab" id="whats-new-image">
        the functionality provided by <a href="http://expasybar.mozdev.org/">expasybar</a> and   <h5 class="infoHeader"><img src="http://www.mozdev.org/sharedimages/whatsnew_top.gif" width="154" alt="What's New"></h5>
        <a href="http://pubmed.mozdev.org/">pubmedbar</a>. <b>Note:</b> Please unintall MSDbar before  <div class="infoItems">
        installing <strong>biobar</strong>. MSDbar may be uninstalled from the dropdown menu item (Uninstall)  <div>News item goes here</div>
        if <strong>jslib</strong> has been installed. You can install jslib   <div>More news item goes here</div>
        <a href="http://downloads.mozdev.org/jslib/xpi/jslib_current.xpi"><strong>here</strong></a>  <div><a href="http://mozdev.org/">mozdev.org</a></div>
      </p>  </div>
        </div>
      <p> This project is under development and any comments/suggestions are welcome.     --></div>
        Please write to <script language="JavaScript"><!-- ***************** INFO/NEWS *************** -->
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      This project is under development and any comments/suggestions
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