File:  [mozdev] / biobar / www / Databases.html
Revision 1.7: download - view: text, annotated - select for diffs - revision graph
Mon Oct 4 14:18:32 2004 UTC (14 years, 2 months ago) by jawahar
Branches: MAIN
CVS tags: HEAD
Version 1.2.1 added, incorporates BioCyc, PDBsum, ASD and many more terms for NCBI including PubChem

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<h3> Databases currently included in biobar</h3>
<p><a href="http://biobar.mozdev.org/installation.html">biobar 1.2.1</a>
provides browsing and searching access to the following
biological databases.<br>
</p>
<table style="text-align: left; width: 988px; height: 312px;" border="3"
 cellpadding="2" cellspacing="2">
  <tbody>
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      <td style="vertical-align: top;"><span style="font-weight: bold;">Data
Collections</span><br>
      </td>
      <td
 style="vertical-align: top; background-color: rgb(255, 204, 204);">1.
EBI Databases with SRS<br>
2. NCBI Databases<br>
3. DNA Database of Japan(DDBj)<br>
      </td>
      <td style="vertical-align: top;"><span style="font-weight: bold;">Functional
Databases</span><br>
      </td>
      <td
 style="vertical-align: top; background-color: rgb(255, 204, 204);">
      <ol>
        <li>Gene Ontology (GO)</li>
        <li>IntAct</li>
        <li>Reactome Database</li>
        <li>BioCyc<br>
        </li>
      </ol>
      </td>
    </tr>
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      <td style="vertical-align: top;"><span style="font-weight: bold;">Sequence
Databases</span><br>
      </td>
      <td
 style="vertical-align: top; background-color: rgb(255, 204, 204);">
      <ol>
        <li>EMBL Nucleotide Database</li>
        <li>Ensembl Genome Browser</li>
        <li>UniProt Sequence Database</li>
        <li>InterPro</li>
        <li>Integr8</li>
        <li>Expert Protein Analysis System (ExPASy)</li>
        <li>Pfam</li>
        <li>Alternative Splicing Database (ASD)<br>
        </li>
      </ol>
      </td>
      <td style="vertical-align: top;"><span style="font-weight: bold;">Structural
Databases</span><br>
      </td>
      <td
 style="vertical-align: top; background-color: rgb(255, 204, 204);">
      <ol>
        <li>Macromolecular Structure Database (MSD)</li>
        <li>Research Collaboratory for Structural Bioinformatics (RCSB)</li>
        <li>Protein Data Bank Japan (PDBj)</li>
        <li>PDBsum<br>
        </li>
        <li>Nucleic Acid Database (NDB)</li>
        <li>CATH</li>
        <li>SCOP</li>
      </ol>
      </td>
    </tr>
    <tr>
      <td style="vertical-align: top;"><span style="font-weight: bold;">Animal
Databases</span><br>
      </td>
      <td
 style="vertical-align: top; background-color: rgb(255, 204, 204);">
      <ol>
        <li>Saccharomyces Genome Database (SGD)<br>
        </li>
        <li>Flybase</li>
        <li>Wormbase</li>
        <li>Rat Genome Database (RGD)<br>
        </li>
        <li>Mouse Genome Informatics (MGI)</li>
      </ol>
      </td>
      <td style="vertical-align: top;"><span style="font-weight: bold;">Plant
Databases</span><br>
      </td>
      <td
 style="vertical-align: top; background-color: rgb(255, 204, 204);">
      <ol>
        <li>Gramene</li>
        <li>MaizeGDB<br>
        </li>
      </ol>
      </td>
    </tr>
  </tbody>
</table>
<p><br>
</p>
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