File:  [mozdev] / biobar / www / Databases.html
Revision 1.3: download - view: text, annotated - select for diffs - revision graph
Sat Aug 28 20:46:49 2004 UTC (13 years, 9 months ago) by jawahar
Branches: MAIN
CVS tags: HEAD
Version 1.2 changes


<h3> Database currently included in biobar</h3>
<p> biobar 1.2 provides browsing and searching access to the following biological databases.</p>
<table style="text-align: left; width: 672px; height: 622px;" border="1"
cellpadding="2" cellspacing="2">
<tbody>
<tr>
<td style="vertical-align: top;"><br>
Data Collections <br>
</td>
<td style="vertical-align: top;">
<ol>
<li>EBI Databases with SRS</li>
<li>NCBI Databases including PubMed</li>
<li>DNA Data Bank of Japan (DDBJ)</li>
</ol>
</td>
</tr>
<tr>
<td style="vertical-align: top;"><br>
<br>
<br>
Structural Databases
</td>
<td style="vertical-align: top;">
<ul>
</ul>
<ol>
<li>Macromolecular Structure Database (MSD)</li>
<li>Research Collaboratory for Structural Bioinformatics (RCSB)</li>
<li>Protein Data Bank, Japan (PDBj)</li>
<li>Nucleic Acid Database (NDB)</li>
<li>Pfam</li>
<li>CATH</li>
<li>SCOP</li>
</ol>
</td>
</tr>
<tr>
<td style="vertical-align: top;"><br>
<br>
<br>
Sequence Databases
</td>
<td style="vertical-align: top;">
<ul>
</ul>
<ol>
<li>EMBL Nucleotide Database</li>
<li>Ensembl Genome Browser</li>
<li>UniProt Sequence Database</li>
<li>InterPro</li>
<li>Integr8</li>
<li>Expert Protein Analysis System (ExPASy)</li>
</ol>
</td>
</tr>
<tr>
<td style="vertical-align: top;">Functional Databases<br>
</td>
<td style="vertical-align: top;">
<ul>
</ul>
<ol>
<li>Gene Ontology (GO)</li>
<li>IntAct</li>
<li>Reactome Database</li>
</ol>
</td>
</tr>
<tr>
<td style="vertical-align: top;">Plant Databases<br>
</td>
<td style="vertical-align: top;">
<ul>
</ul>
<ol>
<li>Gramene</li>
<li>MaizeGDB</li>
</ol>
</td>
</tr>
<tr>
<td style="vertical-align: top;">Animal Databases<br>
</td>
<td style="vertical-align: top;">
<ol>
<li>Saccharomyces Genome Database (SGD)<br>
</li>
<li>Flybase</li>
<li>Wormbase</li>
<li>Rat Genome Database (RGD)<br>
</li>
<li>Mouse Genome Informatics (MGI)<br>
</li>
</ol>
</td>
</tr>
</tbody>
</table>

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