File:  [mozdev] / biobar / www / Databases.html
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Fri Oct 5 15:35:21 2007 UTC (11 years, 9 months ago) by jawahar
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New Version 1.5.3

    1: <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
    2: <html>
    3: <head>
    4:   <meta name="generator" content="HTML Tidy, see www.w3.org">
    5:   <title></title>
    6: </head>
    7: <body>
    8: <h3>Databases currently included in biobar</h3>
    9: <p><a href="http://biobar.mozdev.org/installation.html">biobar 1.5.3</a> provides browsing and searching access to the following
   10: biological databases and others.<br>
   11: </p>
   12: 
   13: <br>
   14: <table style="text-align: left; width: 988px; height: 312px;" border="3"
   15:  cellpadding="2" cellspacing="2">
   16:   <tbody>
   17:     <tr>
   18:       <td style="vertical-align: top;"><span style="font-weight: bold;">Data
   19: Collections</span><br>
   20:       </td>
   21:       <td
   22:  style="vertical-align: top; background-color: rgb(255, 204, 204);">1.
   23: EBI Databases with SRS<br>
   24: 2. NCBI Databases<br>
   25: 3. DNA Database of Japan(DDBj)<br>
   26:       </td>
   27:       <td style="vertical-align: top;"><span style="font-weight: bold;">Functional
   28: Databases</span><br>
   29:       </td>
   30:       <td
   31:  style="vertical-align: top; background-color: rgb(255, 204, 204);">
   32:       <ol>
   33:         <li>aMAZE</li>
   34:         <li>araCyc<br>
   35:         </li>
   36:         <li>BioCyc</li>
   37:         <li>KEGG</li>
   38:         <li>Gene Ontology (GO)</li>
   39:         <li>IntAct</li>
   40: 	<li>PRIDE</li>
   41: 	<li>PhenomicDB</li>
   42:         <li>Reactome Database</li>
   43:       </ol>
   44:       </td>
   45:     </tr>
   46:     <tr>
   47:       <td style="vertical-align: top;"><span style="font-weight: bold;">Sequence
   48: Databases</span><br>
   49:       </td>
   50:       <td
   51:  style="vertical-align: top; background-color: rgb(255, 204, 204);">
   52:       <ol>
   53:         <li>EMBL Nucleotide Database</li>
   54:         <li>Ensembl Genome Browser</li>
   55:         <li>UniProt Sequence Database</li>
   56:         <li>InterPro</li>
   57:         <li>Integr8</li>
   58:         <li>Expert Protein Analysis System (ExPASy)</li>
   59:         <li>Pfam</li>
   60:         <li>Alternative Splicing Database (ASD)</li>
   61:         </li>
   62:       </ol>
   63:       </td>
   64:       <td style="vertical-align: top;"><span style="font-weight: bold;">Structural
   65: Databases</span><br>
   66:       </td>
   67:       <td
   68:  style="vertical-align: top; background-color: rgb(255, 204, 204);">
   69:       <ol>
   70:         <li>Macromolecular Structure Database (MSD)</li>
   71:         <li>Research Collaboratory for Structural Bioinformatics
   72: (RCSB)</li>
   73:         <li>Protein Data Bank Japan (PDBj)</li>
   74:         <li>BMRB</li>
   75:         <li>OCA<br>
   76:         </li>
   77:         <li>PDBsum<br>
   78:         </li>
   79:         <li>EM-Search</li>
   80:         <li>Nucleic Acid Database (NDB)</li>
   81:         <li>CATH</li>
   82:         <li>SCOP</li>
   83:         <li>EDS<br>
   84:         </li>
   85:       </ol>
   86:       </td>
   87:     </tr>
   88:     <tr>
   89:       <td style="vertical-align: top;"><span style="font-weight: bold;">Animal
   90: Databases</span><br>
   91:       </td>
   92:       <td
   93:  style="vertical-align: top; background-color: rgb(255, 204, 204);">
   94:       <ol>
   95:         <li>Saccharomyces Genome Database (SGD)<br>
   96:         </li>
   97:         <li>Flybase</li>
   98:         <li>Wormbase</li>
   99:         <li>Rat Genome Database (RGD)<br>
  100:         </li>
  101:         <li>Mouse Genome Informatics (MGI)</li>
  102:         <li>Zebrafish Information (ZFIN)</li>
  103:       </ol>
  104:       </td>
  105:       <td style="vertical-align: top;"><span style="font-weight: bold;">Plant
  106: Databases</span><br>
  107:       </td>
  108:       <td
  109:  style="vertical-align: top; background-color: rgb(255, 204, 204);">
  110:       <ol>
  111:         <li>Gramene</li>
  112: 	<li>GrainGenes</li>
  113:         <li>MaizeGDB<br>
  114: 	<li>Tropicos</li>
  115:         </li>
  116:       </ol>
  117:       </td>
  118:     </tr>
  119:   </tbody>
  120: </table>
  121: <p><br>
  122: </p>
  123: <br>
  124: </body>
  125: </html>

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