File:  [mozdev] / biobar / www / Databases.html
Revision 1.21: download - view: text, annotated - select for diffs - revision graph
Fri Oct 5 15:35:21 2007 UTC (10 years ago) by jawahar
Branches: MAIN
CVS tags: HEAD
New Version 1.5.3

<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
<html>
<head>
  <meta name="generator" content="HTML Tidy, see www.w3.org">
  <title></title>
</head>
<body>
<h3>Databases currently included in biobar</h3>
<p><a href="http://biobar.mozdev.org/installation.html">biobar 1.5.3</a> provides browsing and searching access to the following
biological databases and others.<br>
</p>

<br>
<table style="text-align: left; width: 988px; height: 312px;" border="3"
 cellpadding="2" cellspacing="2">
  <tbody>
    <tr>
      <td style="vertical-align: top;"><span style="font-weight: bold;">Data
Collections</span><br>
      </td>
      <td
 style="vertical-align: top; background-color: rgb(255, 204, 204);">1.
EBI Databases with SRS<br>
2. NCBI Databases<br>
3. DNA Database of Japan(DDBj)<br>
      </td>
      <td style="vertical-align: top;"><span style="font-weight: bold;">Functional
Databases</span><br>
      </td>
      <td
 style="vertical-align: top; background-color: rgb(255, 204, 204);">
      <ol>
        <li>aMAZE</li>
        <li>araCyc<br>
        </li>
        <li>BioCyc</li>
        <li>KEGG</li>
        <li>Gene Ontology (GO)</li>
        <li>IntAct</li>
	<li>PRIDE</li>
	<li>PhenomicDB</li>
        <li>Reactome Database</li>
      </ol>
      </td>
    </tr>
    <tr>
      <td style="vertical-align: top;"><span style="font-weight: bold;">Sequence
Databases</span><br>
      </td>
      <td
 style="vertical-align: top; background-color: rgb(255, 204, 204);">
      <ol>
        <li>EMBL Nucleotide Database</li>
        <li>Ensembl Genome Browser</li>
        <li>UniProt Sequence Database</li>
        <li>InterPro</li>
        <li>Integr8</li>
        <li>Expert Protein Analysis System (ExPASy)</li>
        <li>Pfam</li>
        <li>Alternative Splicing Database (ASD)</li>
        </li>
      </ol>
      </td>
      <td style="vertical-align: top;"><span style="font-weight: bold;">Structural
Databases</span><br>
      </td>
      <td
 style="vertical-align: top; background-color: rgb(255, 204, 204);">
      <ol>
        <li>Macromolecular Structure Database (MSD)</li>
        <li>Research Collaboratory for Structural Bioinformatics
(RCSB)</li>
        <li>Protein Data Bank Japan (PDBj)</li>
        <li>BMRB</li>
        <li>OCA<br>
        </li>
        <li>PDBsum<br>
        </li>
        <li>EM-Search</li>
        <li>Nucleic Acid Database (NDB)</li>
        <li>CATH</li>
        <li>SCOP</li>
        <li>EDS<br>
        </li>
      </ol>
      </td>
    </tr>
    <tr>
      <td style="vertical-align: top;"><span style="font-weight: bold;">Animal
Databases</span><br>
      </td>
      <td
 style="vertical-align: top; background-color: rgb(255, 204, 204);">
      <ol>
        <li>Saccharomyces Genome Database (SGD)<br>
        </li>
        <li>Flybase</li>
        <li>Wormbase</li>
        <li>Rat Genome Database (RGD)<br>
        </li>
        <li>Mouse Genome Informatics (MGI)</li>
        <li>Zebrafish Information (ZFIN)</li>
      </ol>
      </td>
      <td style="vertical-align: top;"><span style="font-weight: bold;">Plant
Databases</span><br>
      </td>
      <td
 style="vertical-align: top; background-color: rgb(255, 204, 204);">
      <ol>
        <li>Gramene</li>
	<li>GrainGenes</li>
        <li>MaizeGDB<br>
	<li>Tropicos</li>
        </li>
      </ol>
      </td>
    </tr>
  </tbody>
</table>
<p><br>
</p>
<br>
</body>
</html>

FreeBSD-CVSweb <freebsd-cvsweb@FreeBSD.org>