File:  [mozdev] / biobar / www / BiobarGroups.xml
Revision 1.1: download - view: text, annotated - select for diffs - revision graph
Wed Mar 9 16:34:58 2005 UTC (14 years, 4 months ago) by jawahar
Branches: MAIN
CVS tags: HEAD
XML files for biobar 1.3 plus modifications of pages

    1: <?xml version="1.0"?>
    2: <biobarGroups>
    3: 	<Group name="Structures">
    4: 		<Menuitems>
    5: 			<Menuitem SearchTerm="PDB ID">
    6: 				<url>http://www.ebi.ac.uk/msd-srv/atlas?toolbar=biobar&amp;id=</url>
    7: 				<url>http://oca.ebi.ac.uk/oca-bin/ocaids?toolbar=biobar&amp;id=</url>
    8: 				<url>http://www.rcsb.org/pdb/cgi/explore.cgi?toolbar=biobar&amp;pdbId=</url>
    9: 				<url>http://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/pdbsum/GetPage.pl?toolbar=biobar&amp;pdbcode=</url>
   10: 			</Menuitem>	
   11: 			<Menuitem SearchTerm="Text Search">
   12: 				<url>http://www.ebi.ac.uk/msd-srv/msdlite/apps/query?toolbar=biobar&amp;textSearch=</url>
   13: 				<url>http://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/pdbsum/SearchHeaders.pl?toolbar=biobar&amp;string=</url>
   14: 				<url>http://www.rcsb.org/pdb/cgi/resultBrowser.cgi?toolbar=biobar&amp;Lucene::keyword_op=fullText&amp;Lucene::keyword=</url>
   15: 				<url>http://oca.ebi.ac.uk/oca-bin/ocaids?toolbar=biobar&amp;tx=</url>
   16: 			</Menuitem>
   17: 			<Menuitem SearchTerm="Keyword">
   18: 				<url>http://www.ebi.ac.uk/msd-srv/msdlite/apps/query?toolbar=biobar&amp;keyword=</url>
   19: 				<url>http://www.rcsb.org/pdb/cgi/resultBrowser.cgi?toolbar=biobar&amp;Lucene::keyword=</url>
   20: 				<url>http://oca.ebi.ac.uk/oca-bin/ocaids?toolbar=biobar&amp;kw=</url>
   21: 			</Menuitem>
   22: 			<Menuitem SearchTerm="Author">
   23: 				<url>http://www.ebi.ac.uk/msd-srv/msdlite/apps/query?toolbar=biobar&amp;author=</url>
   24: 				<url>http://www.rcsb.org/pdb/cgi/resultBrowser.cgi?toolbar=biobar&amp;Lucene::keyword_op=name&amp;Lucene::keyword=</url>
   25: 				<url>http://oca.ebi.ac.uk/oca-bin/ocaids?toolbar=biobar&amp;au=</url>
   26: 			</Menuitem>
   27: 			<Menuitem SearchTerm="EC Number">
   28: 				<url>http://www.ebi.ac.uk/msd-srv/msdlite/apps/query?toolbar=biobar&amp;textSearch=</url>
   29: 				<url>http://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/pdbsum/SearchHeaders.pl?toolbar=biobar&amp;string=</url>
   30: 				<url>http://www.rcsb.org/pdb/cgi/resultBrowser.cgi?toolbar=biobar&amp;CoreDB__EC=</url>
   31: 				<url>http://oca.ebi.ac.uk/oca-bin/ocaids?toolbar=biobar&amp;tx=EC.</url>
   32: 			</Menuitem>
   33: 		</Menuitems>
   34: 	</Group>
   35: 	<Group name="Function">
   36: 		<Menuitems>
   37: 			<Menuitem SearchTerm="All">
   38: 				<url>http://www.biocyc.org/substring-search?type=NIL&amp;toolbar=biobar&amp;object=</url>
   39: 				<url>http://www.reactome.org/cgi-bin/search2?toolbar=biobar&amp;CATEGORY=everything&amp;OPERATOR=ALL&amp;SPECIES=&amp;DB=gk_current&amp;QUERY=</url>
   40: 			</Menuitem>
   41: 			<Menuitem SearchTerm="Protein">
   42: 				<url>http://www.amaze.ulb.ac.be/lightbench/polypeptides?expression_input=on&amp;toolbar=biobar&amp;organism=&amp;name_regexp=</url>
   43: 				<url>http://www.biocyc.org/substring-search?type=ENZYME&amp;toolbar=biobar&amp;object=</url>
   44: 				<url>http://www.ebi.ac.uk/ego/GSearch?toolbar=biobar&amp;mode=keyword&amp;ontology=all_ont&amp;query=</url>
   45: 				<url>http://www.genome.jp/dbget-bin/www_bfind_sub?dbkey=enzyme&amp;mode=bfind&amp;max_hit=1000&amp;keywords=</url>
   46: 			</Menuitem>
   47: 			<Menuitem SearchTerm="Gene">
   48: 				<url>http://www.amaze.ulb.ac.be/lightbench/genes?expression_input=on&amp;toolbar=biobar&amp;organism=&amp;name_regexp=</url>
   49: 				<url>http://www.biocyc.org/substring-search?type=GENE&amp;toolbar=biobar&amp;object=</url>
   50: 				<url>http://www.genome.jp/dbget-bin/www_bfind_sub?dbkey=genes&amp;mode=bfind&amp;max_hit=1000&amp;keywords=</url>
   51: 			</Menuitem>
   52: 			<Menuitem SearchTerm="Compound">
   53: 				<url>http://www.amaze.ulb.ac.be/lightbench/compounds?expression_input=on&amp;toolbar=biobar&amp;organism=&amp;name_regexp=</url>
   54: 				<url>http://www.biocyc.org/substring-search?type=COMPOUND&amp;toolbar=biobar&amp;object=</url>
   55: 				<url>http://www.reactome.org/cgi-bin/search2?toolbar=biobar&amp;CATEGORY=molecule&amp;OPERATOR=ALL&amp;SPECIES=&amp;DB=gk_current&amp;QUERY=</url>
   56: 				<url>http://www.genome.jp/dbget-bin/www_bfind_sub?dbkey=compound&amp;mode=bfind&amp;max_hit=1000&amp;keywords=</url>
   57: 			</Menuitem>
   58: 			<Menuitem SearchTerm="Pathway">
   59: 				<url>http://www.amaze.ulb.ac.be/lightbench/processes?expression_input=on&amp;toolbar=biobar&amp;organism=&amp;name_regexp=</url>
   60: 				<url>http://www.biocyc.org/substring-search?type=PATHWAY&amp;toolbar=biobar&amp;object=</url>
   61: 				<url>http://www.reactome.org/cgi-bin/search2?toolbar=biobar&amp;CATEGORY=pathway&amp;OPERATOR=ALL&amp;SPECIES=&amp;DB=gk_current&amp;QUERY=</url>
   62: 				<url>http://www.genome.jp/dbget-bin/www_bfind_sub?dbkey=pathway&amp;mode=bfind&amp;max_hit=1000&amp;keywords=</url>
   63: 			</Menuitem>
   64: 			<Menuitem SearchTerm="Reaction">
   65: 				<url>http://www.biocyc.org/substring-search?type=REACTION&amp;toolbar=biobar&amp;object=</url>
   66: 				<url>http://www.reactome.org/cgi-bin/search2?toolbar=biobar&amp;CATEGORY=reaction&amp;OPERATOR=ALL&amp;SPECIES=&amp;DB=gk_current&amp;QUERY=</url>
   67: 				<url>http://www.genome.jp/dbget-bin/www_bfind_sub?dbkey=reaction&amp;mode=bfind&amp;max_hit=1000&amp;keywords=</url>
   68: 			</Menuitem>
   69: 		</Menuitems>
   70: 	</Group>
   71: 	<Group name="Taxonomy">
   72: 		<Menuitems>
   73: 			<Menuitem SearchTerm="Taxonomy Name">
   74: 				<url>http://www.ebi.ac.uk/newt/display?from=www&amp;match=complete+word&amp;action.x=0&amp;action.y=0&amp;action=Search&amp;search=</url> 
   75: 				<url>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Taxonomy&amp;cmd=search&amp;term=</url>
   76: 			</Menuitem>
   77: 			<Menuitem SearchTerm="Taxonomy ID">
   78: 				<url>http://www.ebi.ac.uk/newt/display?from=www&amp;match=taxonomy+identifier&amp;action.x=6&amp;action.y=10&amp;action=Search&amp;search=</url>
   79: 				<url>http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=</url>
   80: 			</Menuitem>
   81: 		</Menuitems>
   82: 	</Group>	
   83: </biobarGroups>

FreeBSD-CVSweb <freebsd-cvsweb@FreeBSD.org>