File:  [mozdev] / biobar / www / BiobarGroups.xml
Revision 1.1: download - view: text, annotated - select for diffs - revision graph
Wed Mar 9 16:34:58 2005 UTC (12 years, 8 months ago) by jawahar
Branches: MAIN
CVS tags: HEAD
XML files for biobar 1.3 plus modifications of pages

<?xml version="1.0"?>
<biobarGroups>
	<Group name="Structures">
		<Menuitems>
			<Menuitem SearchTerm="PDB ID">
				<url>http://www.ebi.ac.uk/msd-srv/atlas?toolbar=biobar&amp;id=</url>
				<url>http://oca.ebi.ac.uk/oca-bin/ocaids?toolbar=biobar&amp;id=</url>
				<url>http://www.rcsb.org/pdb/cgi/explore.cgi?toolbar=biobar&amp;pdbId=</url>
				<url>http://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/pdbsum/GetPage.pl?toolbar=biobar&amp;pdbcode=</url>
			</Menuitem>	
			<Menuitem SearchTerm="Text Search">
				<url>http://www.ebi.ac.uk/msd-srv/msdlite/apps/query?toolbar=biobar&amp;textSearch=</url>
				<url>http://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/pdbsum/SearchHeaders.pl?toolbar=biobar&amp;string=</url>
				<url>http://www.rcsb.org/pdb/cgi/resultBrowser.cgi?toolbar=biobar&amp;Lucene::keyword_op=fullText&amp;Lucene::keyword=</url>
				<url>http://oca.ebi.ac.uk/oca-bin/ocaids?toolbar=biobar&amp;tx=</url>
			</Menuitem>
			<Menuitem SearchTerm="Keyword">
				<url>http://www.ebi.ac.uk/msd-srv/msdlite/apps/query?toolbar=biobar&amp;keyword=</url>
				<url>http://www.rcsb.org/pdb/cgi/resultBrowser.cgi?toolbar=biobar&amp;Lucene::keyword=</url>
				<url>http://oca.ebi.ac.uk/oca-bin/ocaids?toolbar=biobar&amp;kw=</url>
			</Menuitem>
			<Menuitem SearchTerm="Author">
				<url>http://www.ebi.ac.uk/msd-srv/msdlite/apps/query?toolbar=biobar&amp;author=</url>
				<url>http://www.rcsb.org/pdb/cgi/resultBrowser.cgi?toolbar=biobar&amp;Lucene::keyword_op=name&amp;Lucene::keyword=</url>
				<url>http://oca.ebi.ac.uk/oca-bin/ocaids?toolbar=biobar&amp;au=</url>
			</Menuitem>
			<Menuitem SearchTerm="EC Number">
				<url>http://www.ebi.ac.uk/msd-srv/msdlite/apps/query?toolbar=biobar&amp;textSearch=</url>
				<url>http://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/pdbsum/SearchHeaders.pl?toolbar=biobar&amp;string=</url>
				<url>http://www.rcsb.org/pdb/cgi/resultBrowser.cgi?toolbar=biobar&amp;CoreDB__EC=</url>
				<url>http://oca.ebi.ac.uk/oca-bin/ocaids?toolbar=biobar&amp;tx=EC.</url>
			</Menuitem>
		</Menuitems>
	</Group>
	<Group name="Function">
		<Menuitems>
			<Menuitem SearchTerm="All">
				<url>http://www.biocyc.org/substring-search?type=NIL&amp;toolbar=biobar&amp;object=</url>
				<url>http://www.reactome.org/cgi-bin/search2?toolbar=biobar&amp;CATEGORY=everything&amp;OPERATOR=ALL&amp;SPECIES=&amp;DB=gk_current&amp;QUERY=</url>
			</Menuitem>
			<Menuitem SearchTerm="Protein">
				<url>http://www.amaze.ulb.ac.be/lightbench/polypeptides?expression_input=on&amp;toolbar=biobar&amp;organism=&amp;name_regexp=</url>
				<url>http://www.biocyc.org/substring-search?type=ENZYME&amp;toolbar=biobar&amp;object=</url>
				<url>http://www.ebi.ac.uk/ego/GSearch?toolbar=biobar&amp;mode=keyword&amp;ontology=all_ont&amp;query=</url>
				<url>http://www.genome.jp/dbget-bin/www_bfind_sub?dbkey=enzyme&amp;mode=bfind&amp;max_hit=1000&amp;keywords=</url>
			</Menuitem>
			<Menuitem SearchTerm="Gene">
				<url>http://www.amaze.ulb.ac.be/lightbench/genes?expression_input=on&amp;toolbar=biobar&amp;organism=&amp;name_regexp=</url>
				<url>http://www.biocyc.org/substring-search?type=GENE&amp;toolbar=biobar&amp;object=</url>
				<url>http://www.genome.jp/dbget-bin/www_bfind_sub?dbkey=genes&amp;mode=bfind&amp;max_hit=1000&amp;keywords=</url>
			</Menuitem>
			<Menuitem SearchTerm="Compound">
				<url>http://www.amaze.ulb.ac.be/lightbench/compounds?expression_input=on&amp;toolbar=biobar&amp;organism=&amp;name_regexp=</url>
				<url>http://www.biocyc.org/substring-search?type=COMPOUND&amp;toolbar=biobar&amp;object=</url>
				<url>http://www.reactome.org/cgi-bin/search2?toolbar=biobar&amp;CATEGORY=molecule&amp;OPERATOR=ALL&amp;SPECIES=&amp;DB=gk_current&amp;QUERY=</url>
				<url>http://www.genome.jp/dbget-bin/www_bfind_sub?dbkey=compound&amp;mode=bfind&amp;max_hit=1000&amp;keywords=</url>
			</Menuitem>
			<Menuitem SearchTerm="Pathway">
				<url>http://www.amaze.ulb.ac.be/lightbench/processes?expression_input=on&amp;toolbar=biobar&amp;organism=&amp;name_regexp=</url>
				<url>http://www.biocyc.org/substring-search?type=PATHWAY&amp;toolbar=biobar&amp;object=</url>
				<url>http://www.reactome.org/cgi-bin/search2?toolbar=biobar&amp;CATEGORY=pathway&amp;OPERATOR=ALL&amp;SPECIES=&amp;DB=gk_current&amp;QUERY=</url>
				<url>http://www.genome.jp/dbget-bin/www_bfind_sub?dbkey=pathway&amp;mode=bfind&amp;max_hit=1000&amp;keywords=</url>
			</Menuitem>
			<Menuitem SearchTerm="Reaction">
				<url>http://www.biocyc.org/substring-search?type=REACTION&amp;toolbar=biobar&amp;object=</url>
				<url>http://www.reactome.org/cgi-bin/search2?toolbar=biobar&amp;CATEGORY=reaction&amp;OPERATOR=ALL&amp;SPECIES=&amp;DB=gk_current&amp;QUERY=</url>
				<url>http://www.genome.jp/dbget-bin/www_bfind_sub?dbkey=reaction&amp;mode=bfind&amp;max_hit=1000&amp;keywords=</url>
			</Menuitem>
		</Menuitems>
	</Group>
	<Group name="Taxonomy">
		<Menuitems>
			<Menuitem SearchTerm="Taxonomy Name">
				<url>http://www.ebi.ac.uk/newt/display?from=www&amp;match=complete+word&amp;action.x=0&amp;action.y=0&amp;action=Search&amp;search=</url> 
				<url>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Taxonomy&amp;cmd=search&amp;term=</url>
			</Menuitem>
			<Menuitem SearchTerm="Taxonomy ID">
				<url>http://www.ebi.ac.uk/newt/display?from=www&amp;match=taxonomy+identifier&amp;action.x=6&amp;action.y=10&amp;action=Search&amp;search=</url>
				<url>http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=</url>
			</Menuitem>
		</Menuitems>
	</Group>	
</biobarGroups>

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